Index

A

acq_datetime (rimseval.data_io.kore_to_crd.KORE2CRD property) adjust_overlap_background_peaks() (rimseval.processor.CRDFileProcessor method) all_data (rimseval.data_io.crd_reader.CRDReader property) all_tofs (rimseval.data_io.crd_reader.CRDReader property) append_to_mcal() (rimseval.guis.mcal.CreateMassCalibration method) apply() (rimseval.guis.integrals.DefineAnyTemplate method) (rimseval.guis.integrals.DefineBackgrounds method) (rimseval.guis.integrals.DefineIntegrals method) (rimseval.guis.mcal.CreateMassCalibration method)

apply_individual_shots_filter() (rimseval.processor.CRDFileProcessor method) apply_to_all() (rimseval.multi_proc.MultiFileProcessor method) ASC_1A (rimseval.data_io.lst_to_crd.LST2CRD.ASCIIFormat attribute) ASC_9 (rimseval.data_io.lst_to_crd.LST2CRD.ASCIIFormat attribute) ascii_to_ndarray() (in module rimseval.data_io.lst_utils)

B

bin_width_ps (rimseval.data_io.kore_to_crd.KORE2CRD property) button_pressed() (rimseval.guis.integrals.DefineAnyTemplate method) (rimseval.guis.integrals.DefineBackgrounds method) (rimseval.guis.integrals.DefineIntegrals method)

C

calc_and_draw() (rimseval.guis.plots.DtIons method) (rimseval.guis.plots.IntegralsPerPackage method) (rimseval.guis.plots.IonsPerShot method) calculate_applied_filters() (rimseval.processor.CRDFileProcessor method) channel_data (rimseval.data_io.lst_to_crd.LST2CRD property) channel_tag (rimseval.data_io.lst_to_crd.LST2CRD property) check_mcal_length() (rimseval.guis.mcal.CreateMassCalibration method) check_peak_overlapping() (rimseval.guis.integrals.DefineAnyTemplate method) clear_layout() (rimseval.guis.integrals.DefineAnyTemplate method)

close_files() (rimseval.multi_proc.MultiFileProcessor method) close_selected_files() (rimseval.multi_proc.MultiFileProcessor method) CRDFileProcessor (class in rimseval.processor) CRDHeader (class in rimseval.data_io.crd_utils) CRDReader (class in rimseval.data_io.crd_reader) create_buttons() (rimseval.guis.integrals.DefineAnyTemplate method) create_mass_cal_app() (in module rimseval.guis.mcal) create_packages() (in module rimseval.processor_utils) CreateMassCalibration (class in rimseval.guis.mcal) CURRENT_DEFAULTS (in module rimseval.data_io.crd_utils)

D

DAT_9 (rimseval.data_io.lst_to_crd.LST2CRD.DATFormat attribute) data_format (rimseval.data_io.lst_to_crd.LST2CRD property) dead_time_correction() (in module rimseval.processor_utils) (rimseval.processor.CRDFileProcessor method) def_backgrounds (rimseval.processor.CRDFileProcessor property) def_integrals (rimseval.processor.CRDFileProcessor property) def_mcal (rimseval.processor.CRDFileProcessor property)

define_backgrounds_app() (in module rimseval.guis.integrals) define_integrals_app() (in module rimseval.guis.integrals) DefineAnyTemplate (class in rimseval.guis.integrals) DefineBackgrounds (class in rimseval.guis.integrals) DefineIntegrals (class in rimseval.guis.integrals) dt_ions() (in module rimseval.guis.plots) DtIons (class in rimseval.guis.plots)

E

emit_mouse_position() (rimseval.guis.mpl_canvas.MplCanvasRightClick method)

export() (in module rimseval.data_io.integrals)

F

file_name (rimseval.data_io.lst_to_crd.LST2CRD property) files (rimseval.multi_proc.MultiFileProcessor property) filter_max_ions_per_pkg() (rimseval.processor.CRDFileProcessor method) filter_max_ions_per_shot() (rimseval.processor.CRDFileProcessor method)

filter_max_ions_per_time() (rimseval.processor.CRDFileProcessor method) filter_max_ions_per_tof_window() (rimseval.processor.CRDFileProcessor method) filter_pkg_peirce_countrate() (rimseval.processor.CRDFileProcessor method) find_closest_iso() (in module rimseval.guis.mcal) first_bin (rimseval.data_io.kore_to_crd.KORE2CRD property)

G

gaussian() (in module rimseval.utilities.fitting) gaussian_fit_get_max() (in module rimseval.processor_utils)

get_sweep_time_ascii() (in module rimseval.data_io.lst_utils) guess_mass() (rimseval.guis.mcal.CreateMassCalibration method)

H

HEADER_START (in module rimseval.data_io.crd_utils)

I

integrals_bg_corr() (in module rimseval.processor_utils) integrals_calc() (rimseval.processor.CRDFileProcessor method) integrals_calc_delta() (rimseval.processor.CRDFileProcessor method) integrals_overlap (rimseval.processor.CRDFileProcessor property) integrals_packages() (in module rimseval.guis.plots)

integrals_summing() (in module rimseval.processor_utils) IntegralsPerPackage (class in rimseval.guis.plots) ions_per_shot (rimseval.data_io.crd_reader.CRDReader property) ions_to_tof_map (rimseval.data_io.crd_reader.CRDReader property) IonsPerShot (class in rimseval.guis.plots)

K

KORE2CRD (class in rimseval.data_io.kore_to_crd)

L

last_bin (rimseval.data_io.kore_to_crd.KORE2CRD property) load() (in module rimseval.data_io.integrals) load_cal_file() (in module rimseval.interfacer) load_calibration_single() (rimseval.multi_proc.MultiFileProcessor static method) load_calibrations() (rimseval.multi_proc.MultiFileProcessor method)

logy_toggle() (rimseval.guis.mpl_canvas.PlotSpectrum method) (rimseval.guis.plots.PlotFigure method) LST2CRD (class in rimseval.data_io.lst_to_crd) LST2CRD.ASCIIFormat (class in rimseval.data_io.lst_to_crd) LST2CRD.BinWidthTDC (class in rimseval.data_io.lst_to_crd) LST2CRD.DATFormat (class in rimseval.data_io.lst_to_crd)

M

mask_filter_max_ions_per_time() (in module rimseval.processor_utils) mask_filter_max_ions_per_tof_window() (in module rimseval.processor_utils) mass_calibration() (in module rimseval.processor_utils) (rimseval.processor.CRDFileProcessor method) mass_spectrum() (in module rimseval.data_io.export) mass_to_tof() (in module rimseval.processor_utils) MCS8A (rimseval.data_io.lst_to_crd.LST2CRD.BinWidthTDC attribute) mouse_right_press() (rimseval.guis.integrals.DefineAnyTemplate method)

mouse_right_press_position (rimseval.guis.mpl_canvas.MplCanvasRightClick attribute) mouse_right_release_position (rimseval.guis.mpl_canvas.MplCanvasRightClick attribute) mouse_right_released() (rimseval.guis.integrals.DefineAnyTemplate method) MPA4A (rimseval.data_io.lst_to_crd.LST2CRD.BinWidthTDC attribute) MplCanvasRightClick (class in rimseval.guis.mpl_canvas) multi_range_indexes() (in module rimseval.processor_utils) MultiFileProcessor (class in rimseval.multi_proc) MyMplNavigationToolbar (class in rimseval.guis.mpl_canvas)

N

name (rimseval.processor.CRDFileProcessor property) nof_ions (rimseval.data_io.crd_reader.CRDReader property) nof_ions_per_shot() (in module rimseval.guis.plots) nof_shots (rimseval.data_io.crd_reader.CRDReader property)

not_index() (in module rimseval.utilities.utils) num_of_files (rimseval.multi_proc.MultiFileProcessor property) num_pixels (rimseval.data_io.kore_to_crd.KORE2CRD property) num_scans (rimseval.data_io.kore_to_crd.KORE2CRD property) num_shots (rimseval.data_io.kore_to_crd.KORE2CRD property)

O

open_additional_files() (rimseval.multi_proc.MultiFileProcessor method)

open_files() (rimseval.multi_proc.MultiFileProcessor method) optimize_mcal() (rimseval.processor.CRDFileProcessor method)

P

packages() (rimseval.processor.CRDFileProcessor method) parse_data() (rimseval.data_io.crd_reader.CRDReader method) parse_data_fallback() (rimseval.data_io.crd_reader.CRDReader method) peak_fwhm (rimseval.multi_proc.MultiFileProcessor property) (rimseval.processor.CRDFileProcessor property) peaks_changed() (rimseval.guis.integrals.DefineAnyTemplate method) (rimseval.guis.integrals.DefineBackgrounds method) (rimseval.guis.integrals.DefineIntegrals method)

peirce_criterion() (in module rimseval.utilities.peirce) plot_ms() (rimseval.guis.mpl_canvas.PlotSpectrum method) plot_tof() (rimseval.guis.mpl_canvas.PlotSpectrum method) PlotFigure (class in rimseval.guis.plots) PlotSpectrum (class in rimseval.guis.mpl_canvas)

Q

query_mass() (rimseval.guis.mcal.CreateMassCalibration method)

R

read_data() (rimseval.data_io.crd_reader.CRDReader method) read_files() (rimseval.multi_proc.MultiFileProcessor method) read_lion_eval_calfile() (in module rimseval.interfacer) read_list_file() (rimseval.data_io.lst_to_crd.LST2CRD method) reject_outliers() (in module rimseval.utilities.peirce) release_pan() (rimseval.guis.mpl_canvas.MyMplNavigationToolbar method)

release_zoom() (rimseval.guis.mpl_canvas.MyMplNavigationToolbar method) remove_shots_from_filtered_packages_ind() (in module rimseval.processor_utils) remove_shots_from_packages() (in module rimseval.processor_utils) residuals_gaussian() (in module rimseval.utilities.fitting) right_click_event() (rimseval.guis.mcal.CreateMassCalibration method) run_macro() (rimseval.processor.CRDFileProcessor method)

S

save_cal_file() (in module rimseval.interfacer) secondary_axis() (rimseval.guis.mcal.CreateMassCalibration method) set_data_format() (rimseval.data_io.lst_to_crd.LST2CRD method) shade_backgrounds() (rimseval.guis.integrals.DefineBackgrounds method) shade_peaks() (rimseval.guis.integrals.DefineAnyTemplate method) shot_pattern (rimseval.data_io.kore_to_crd.KORE2CRD property) shot_to_tof_mapper() (in module rimseval.data_io.crd_utils) shots_per_pixel (rimseval.data_io.kore_to_crd.KORE2CRD property) signal_backgrounds_defined (rimseval.guis.integrals.DefineBackgrounds attribute)

signal_calibration_applied (rimseval.guis.mcal.CreateMassCalibration attribute) signal_integrals_defined (rimseval.guis.integrals.DefineIntegrals attribute) signal_processed (rimseval.multi_proc.MultiFileProcessor attribute) sort_backgrounds() (rimseval.processor.CRDFileProcessor method) sort_data_into_spectrum() (in module rimseval.processor_utils) sort_integrals() (rimseval.guis.integrals.DefineAnyTemplate method) (rimseval.processor.CRDFileProcessor method) spectrum_full() (rimseval.processor.CRDFileProcessor method) spectrum_part() (rimseval.processor.CRDFileProcessor method)

T

tableau_color() (in module rimseval.guis.integrals) timestamp (rimseval.processor.CRDFileProcessor property)

tof_spectrum() (in module rimseval.data_io.export) tof_to_mass() (in module rimseval.processor_utils) transfer_lst_to_crd_data() (in module rimseval.data_io.lst_utils)

U

undo_last_mcal() (rimseval.guis.mcal.CreateMassCalibration method) us_to_chan (rimseval.processor.CRDFileProcessor property)

user_input() (rimseval.guis.integrals.DefineAnyTemplate method) (rimseval.guis.integrals.DefineBackgrounds method) (rimseval.guis.integrals.DefineIntegrals method)

V

v1p0 (rimseval.data_io.crd_utils.CRDHeader attribute)

W

workup_file_writer() (in module rimseval.data_io.excel_writer)

write_crd() (rimseval.data_io.kore_to_crd.KORE2CRD method) (rimseval.data_io.lst_to_crd.LST2CRD method)

X

xdim (rimseval.data_io.kore_to_crd.KORE2CRD property)

Y

ydim (rimseval.data_io.kore_to_crd.KORE2CRD property)